This is a growing list of articles were are compiling that highlight the need for a paradigm shift in the way the scientific community operates. 

On the Impact Factor:

Why the impact factor of journals should not be used for evaluating research. 

Impact factor: a valid measure of journal quality?

On Replication:

Restoring confidence in psychological science findings: A call for direct replication studies

Systemic Problems in Science

Why Science is Not Necessarily Self-Correcting

Why Most Published Research Findings are False


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